Ciprofloxacin

Prescription ·Strong evidence ·Reviewed May 2026

A second-generation fluoroquinolone with potent gram-negative activity, including Pseudomonas aeruginosa. Used for complicated urinary tract infections, pyelonephritis, infectious diarrhea, intra-abdominal infections (with metronidazole), bone and joint infections, anthrax prophylaxis, and febrile neutropenia. Due to FDA black box warnings regarding serious adverse effects, fluoroquinolones are reserved for infections without safer alternatives.

What it's good for
  • Treats complicated urinary tract infections and pyelonephritis1
  • Treats Pseudomonas aeruginosa infections1
  • Treats infectious diarrhea (traveler's diarrhea, Salmonella, Shigella)6,7
  • Treats bone and joint infections (oral option for osteomyelitis)1
  • Anthrax post-exposure prophylaxis
What to watch for
  • Nausea and diarrhea
  • Tendinitis and tendon rupture (black box warning)
  • Peripheral neuropathy (potentially irreversible)
  • Known hypersensitivity to ciprofloxacin or any fluoroquinolone4,1
  • Concomitant tizanidine use (marked increase in tizanidine levels via CYP1A2 inhibition)

The bottom line

Evidence rating strong. Most-documented uses: treats complicated urinary tract infections and pyelonephritis, treats pseudomonas aeruginosa infections, treats infectious diarrhea (traveler's diarrhea, salmonella, shigella). 10 sources indexed (1989–2021), with 19 interaction records on file.

The science

How it works, mechanistically.

Core mechanism

Inhibits bacterial DNA gyrase (topoisomerase II) and topoisomerase IV, enzymes essential for DNA replication, transcription, repair, and recombination. DNA gyrase introduces negative supercoils to relieve torsional strain during replication; topoisomerase IV decatenates daughter chromosomes after replication. By trapping the enzyme-DNA complex, ciprofloxacin causes double-stranded DNA breaks, leading to rapid bactericidal activity.

Class
Fluoroquinolone Antibiotic
Absorption
Best on an empty stomach
Dosing

Dosing & protocol.

Common range
250-750 mg every 12 hours; XR: 500-1000 mg once daily for UTI; IV: 200-400 mg every 8-12 hours (as prescribed by your physician)
Recommended form
Oral tablets, extended-release tablets, suspension, or IV

Oral bioavailability 70-80%. Do NOT take with calcium, iron, magnesium, zinc, or aluminum-containing antacids, chelation reduces absorption by up to 90%. Separate from dairy products and mineral supplements by at least 2 hours before or 6 hours after. Do not take with enteral feeds.

Depletions

What it depletes.

Nutrients this medication can lower over time, and what to replace.

Magnesium

Moderate

Fluoroquinolones can increase renal magnesium wasting and can also bind supplemental magnesium in the gut during active treatment.

Replace Magnesium GlycinateMonitor Serum magnesium or RBC magnesiumOnset Usually during the treatment window
Safety

Full safety detail.

Side effects

  • Nausea and diarrhea
  • Tendinitis and tendon rupture (black box warning)
  • Peripheral neuropathy (potentially irreversible)
  • CNS effects (dizziness, headache, insomnia, seizures)
  • QT prolongation
  • Photosensitivity
  • Clostridioides difficile-associated diarrhea
  • Aortic aneurysm/dissection (rare)

Contraindications

  • Known hypersensitivity to ciprofloxacin or any fluoroquinolone4,1
  • Concomitant tizanidine use (marked increase in tizanidine levels via CYP1A2 inhibition)
  • Myasthenia gravis (may exacerbate muscle weakness)
  • History of tendon disorders related to fluoroquinolone use4
  • Children under 18 (except for specific indications like anthrax, complicated UTI)
  • Known aortic aneurysm or high risk for aortic dissection10
Interactions

Interaction records.

SeriousTiming Sensitive

Calcium

Calcium chelates ciprofloxacin in the GI tract, forming insoluble calcium-quinolone complexes that can reduce ciprofloxacin absorption by up to 90%. This can render the antibiotic completely ineffective, leading to treatment failure and potential antibiotic resistance development.

Recommendation: Separate ciprofloxacin and calcium supplements by at least 2 hours (take ciprofloxacin 2 hours before or 6 hours after calcium). This timing separation is critical for maintaining antibiotic efficacy.

SeriousTiming Sensitive

Iron

Iron strongly chelates ciprofloxacin, forming insoluble iron-quinolone complexes that dramatically reduce ciprofloxacin absorption and efficacy. This interaction can cause antibiotic treatment failure, which is particularly dangerous during active infection.

Recommendation: Separate ciprofloxacin and iron supplements by at least 2 hours (take ciprofloxacin 2 hours before or 6 hours after iron). Do not take them together under any circumstances during active antibiotic treatment.

SeriousTiming Sensitive

Magnesium Glycinate

Magnesium chelates ciprofloxacin, forming insoluble complexes that substantially reduce antibiotic absorption. Magnesium-containing antacids are well-documented to impair fluoroquinolone efficacy. This interaction can lead to subtherapeutic antibiotic levels and treatment failure.

Recommendation: Separate ciprofloxacin and magnesium supplements by at least 2 hours (take ciprofloxacin 2 hours before or 6 hours after magnesium). This includes magnesium-containing antacids and laxatives.

SeriousTiming Sensitive

Zinc

Zinc chelates ciprofloxacin in the GI tract, reducing absorption and potentially causing treatment failure. Zinc-containing multivitamins have been shown to reduce ciprofloxacin bioavailability significantly, compromising antibacterial efficacy.

Recommendation: Separate ciprofloxacin and zinc supplements by at least 2 hours (take ciprofloxacin 2 hours before or 6 hours after zinc). Check multivitamin labels for zinc content and separate accordingly.

DangerousContraindicated

Amiodarone

Both amiodarone and fluoroquinolones independently prolong the QT interval. Concurrent use creates additive QT prolongation risk, potentially leading to torsades de pointes, a life-threatening ventricular arrhythmia.

Recommendation: Avoid concurrent use if possible. If unavoidable, perform baseline ECG, monitor QTc closely, and discontinue if QTc exceeds 500 ms. Ensure electrolytes (K+, Mg2+) are normal.

SeriousTiming Sensitive

Aluminum/Magnesium Hydroxide

Aluminum and magnesium in antacids form insoluble chelate complexes with ciprofloxacin in the gut, dramatically reducing antibiotic absorption. Studies have shown bioavailability reductions of 50 to 90 percent when taken together, which can drop ciprofloxacin levels below the threshold needed to clear infection. This is one of the most clinically significant absorption interactions for fluoroquinolones.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after any aluminum or magnesium hydroxide antacid. Do not co-administer in the same dose.

SeriousTiming Sensitive

Calcium Carbonate

Calcium carbonate, whether taken as an antacid or calcium supplement, binds ciprofloxacin in the gut and reduces its absorption by 30 to 50 percent. Even calcium-fortified foods such as fortified orange juice or dairy can produce clinically meaningful reductions. Lower antibiotic exposure can lead to treatment failure and resistance.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after calcium carbonate. Avoid taking with calcium-fortified drinks or dairy in the same window.

SeriousTiming Sensitive

Iron Bisglycinate

Iron, including chelated forms like iron bisglycinate, binds ciprofloxacin in the gastrointestinal tract and forms insoluble complexes that prevent absorption. The reduction in ciprofloxacin bioavailability can exceed 50 percent. Although bisglycinate is marketed as gentler on the gut, it still contains free iron available for fluoroquinolone chelation in the intestinal lumen.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after any iron supplement, including bisglycinate. Do not take together in the same dose.

SeriousTiming Sensitive

Magnesium Citrate

Magnesium citrate, like other magnesium salts, chelates ciprofloxacin in the gut and reduces its absorption. Single-dose studies have shown bioavailability reductions of more than 40 percent when magnesium and ciprofloxacin are taken together. Lower antibiotic concentrations risk treatment failure.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after magnesium citrate. Do not co-administer in the same dose.

SeriousTiming Sensitive

Magnesium L-Threonate

All forms of supplemental magnesium, including magnesium L-threonate used for cognitive support, chelate ciprofloxacin in the gut and reduce its absorption. The bioavailability reduction can exceed 40 percent. The chelation is driven by free Mg2+, which dissociates from any magnesium salt in the acidic environment of the stomach.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after magnesium L-threonate. Do not combine in the same dose.

SeriousTiming Sensitive

Magnesium Malate

Magnesium malate, like other magnesium salts, releases Mg2+ in the gut that chelates ciprofloxacin and reduces its absorption. The bioavailability reduction is clinically meaningful and can compromise antibiotic efficacy.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after magnesium malate. Do not co-administer.

SeriousTiming Sensitive

Magnesium Taurate

Magnesium taurate dissociates in the gut to release free Mg2+, which chelates ciprofloxacin and dramatically reduces its absorption. Even modest doses of supplemental magnesium can lower fluoroquinolone bioavailability enough to cause treatment failure.

Recommendation: Take ciprofloxacin at least 2 hours before or 6 hours after magnesium taurate. Do not co-administer.

Sources

Sources, by evidence tier.

Numbered references. Citations throughout the page link here.

Meta-analyses & systematic reviews

6

Randomized controlled trials

1
  • 7Safety of ciprofloxacin. A reviewNeeds reviewPMIDRahm V, Schacht P · Scandinavian journal of infectious diseases. Supplementum · 1989

    Rahm V, Schacht P. Safety of ciprofloxacin. A review. Scandinavian journal of infectious diseases. Supplementum. 1989

Keep exploring

Deep dives & adjacent profiles.

This page is educational. Do not start, stop, or change a supplement or medication based on it without checking with a qualified healthcare professional.

Use this with your stack

Ciprofloxacin in NutriStack.

Add it to your stack, see how it interacts with everything else you take, and get a Stack Score that updates the moment it does.

NutriStack is an informational and organizational tool, not a medical service, and not a substitute for professional advice. Always consult a qualified healthcare professional before starting, stopping, or changing any supplement or medication.